trifusion.ortho.orthomclBlastParser module¶

trifusion.ortho.orthomclBlastParser.cur = None¶

Read all fasta files from a folder, placing the genes present on those fasta into a single variable

trifusion.ortho.orthomclBlastParser.format_evalue(evalue)[source]¶

trifusion.ortho.orthomclBlastParser.get_genes(files_dir)[source]¶

trifusion.ortho.orthomclBlastParser.get_start_end(h)[source]¶

trifusion.ortho.orthomclBlastParser.get_taxon_and_length(subject, genes)[source]¶

trifusion.ortho.orthomclBlastParser.non_overlapping_match(subject)[source]¶

trifusion.ortho.orthomclBlastParser.orthomcl_blast_parser(blast_file, fasta_dir, db_dir, nm)[source]¶

trifusion.ortho.orthomclBlastParser.print_previous_subject(subject, db)[source]¶