trifusion.base.sanity module¶

trifusion.base.sanity.check_infile_list(infiles)[source]¶

trifusion.base.sanity.mfilters(filt)[source]¶

Checks the type of the some filter options. Assures that the values are within the accepted boundaries of [0-100]. If the provided filter is a decimal, it converts to percentage automatically :param filt: (string) The value provided with the –missing-filter :return:

trifusion.base.sanity.post_aln_checks(arg, aln_obj)[source]¶

trifusion.base.sanity.triseq_arg_check(arg)[source]¶